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Institute for Food Safety and Hygiene

2024

Original papers and review paper

Adnane, M., Whiston, R., Tasara, T., Bleul, U., Chapwanya, A. (2024). Harnessing vaginal probiotics for enhanced management of uterine disease and reproductive performance in dairy cows: a conceptual review. Animals 14, 1073. https://doi.org/10.3390/ani14071073

Badinski, T., Seiffert, S., Graessli, F., Babouee Flury, B. Besold, U., Betschon, E., Biggel, M., Brucher, A., Cusini, A., Dörr, T., Egli, A., Goppel, S., Guesewell, S., Keller, J., von Kietzell, M., Moeller, C., Nolte, O., Ortner, M., Roloff, T., Ruetti, M., Schlegel, M., Seth-Smith, H., Stephan, R., Stocker, R., Vuichard-Gysin, D., Willi, B., Kuster, S., Kahlert, C., Kohler, P. (2024). Colonization with resistant bacteria in hospital employees – an epidemiological surveillance and typing study. Antimicrobial Agents and Chemotherapy 68(11):e0098524. doi: 10.1128/aac.00985-24.

Beindorf, P.M., Horlbog, J.A., Esteban Cuesta, I., Guldimann, C., Sah, I. (2024). Listeria monocytogenes uses de novo purine synthesis to enhance fitness in Lyoner-type sausage, Food Control 161, 110393. https://doi.org/10.1016/j.foodcont.2024.110393

Biggel, M., Cernela, N., Horlbog, J.A., Stephan, R. (2024). Oxford Nanopore’s 2024 sequencing technology for Listeria monocytogenes outbreak detection and source attribution: progress and clone-specific challenges. Journal of Clinical Microbiology 62(11):e0108324. doi: 10.1128/jcm.01083-24.

Capoferri, G., Ghielmetti G., Glatz, B., Mutke, M., Tzankov, A., Stephan , R., Keller, P., Labhardt, N. (2024). Disseminated, fatal reactivation of bovine tuberculosis in a patient treated with Adalimumab: a case report and review of literature. Infection. doi: 10.1007/s15010-024-02364-0

Chatelanat, O., de Lorenzi-Tognon, M., Spahr, L., Cherkaoui, A., Stephan, R., Ongaro, M., Kaiser, L., Goossens, N. (2024). Liver failure after Bacillus cereus food poisoning, an under-recognized entity: A case report. World Journal of Hepatology 16(11): 1339-1347. DOI: 10.4254/wjh.v16.i11.1339.

Chung, T., Salazar, A., Harm, G., Johler, S., Carroll, L., Kovac, J. (2024). Phenotypic validation of whole-genome sequence-based identification of Bacillus cereus sensu stricto biovar Thuringiensis. Applied and Environmental Microbiology 90(4):e0177823. doi: 10.1128/aem.01778-23.

Ehling-Schulz, M., Filter, M., Zinsstag, J., Koutsoumanis, K., Ellouze, M., Teichmann, J., Hilbeck, A., Tonolla, M., Etter, D., Stärk, K., Wiedmann, M., Johler, S. (2024). Risk negotiation: a framework for One Health risk analysis. Bulletin World Health Organisation 102, 453-456. DOI: 10.2471/BLT.23.290672

Etter, D., Biggel, M., Greutmann, M., Cernela, N., Johler, S. (2024). New insights into Bacillus cytotoxicus sources, screening, toxicity, and persistence in food production facilities. Food Microbiology 117:104399. doi: 10.1016/j.fm.2023.104399.

Guo, L., Wambui, J., Wang, Ch., Broos, J., Stephan, R. Kuipers, O. (2024). Rombocin, a short stable natural nisin variant, displays selective antimicrobial activity against Listeria monocytogenes and employs a dual mode of action to kill target bacterial strains. ACS Synthetic Biology 13(1):370-383. doi: 10.1021/acssynbio.3c00612.

Hinrichs, J.B., Kreitlow, A., Plötz, M., Schotte, U., Becher, P., Gremmel, N., Stephan, R., Kemper, N., Abdulmawjood, A. (2024). Development of a sensitive and specific quantitative RT-qPCR method for the detection of hepatitis E virus genotype 3 in porcine liver and foodstuff. Foods, 13, 467.https://doi.org/10.3390/foods13030467.

Karlsmose, A.K., Ivanova, M., Kragh, M.L., Kjeldgaard, J.S., Otani, S., Svendsen, C.A., Papić, B., Zdovc, I., Tasara, T., Stephan, R., Heir, E., Langsrud, S., Møretrø, T., Dalgaard, P., Fagerlund, A., Truelstrup Hansen, L., Aarestrup, F.M., Leekitcharoenphon, P. (2024). A novel metagenomic approach uncovers phage genes as markers for increased disinfectant tolerance in mixed Listeria monocytogenes communities. Infection, Genetics and Evolution 119, 105582. https://doi.org/10.1016/j.meegid.2024.105582.

Mestizo, P.D., Brenig, C., Stephan, R. Zelder, F., Muchaamba, F. (2024). Assessing the antimetabolite activity of modified Vitamin B12 analogs against Lactobacillus delbrueckii and Listeria monocytogenes. LTW - Food Science and Technology 191, 115641. https://doi.org/10.1016/j.lwt.2023.115641.

Meyer, N., Stephan, R., Cernela, N., Horlbog, J.A., Biggel, M. (2024). Genomic characteristics of clinical non-toxigenic Vibrio cholerae isolates in Switzerland: a cross-sectional study. Swiss Medical Weekly 154:3437. doi:https://doi.org/10.57187/s.3437.

Muchaamba, F., Stephan, R. (2024). A comprehensive methodology for microbial strain typing using Fourier Transform Infrared Spectroscopy. Methods and Protocols 7(3), 48. https://doi.org/10.3390/mps7030048

Nguyen, M.N., Gladstone, B.P., De Angelis, G., Biggel, M., Xavier, B.B., Lammens, C., Lin, Q., Van Puyvelde, S., Goossens, H., Kumar‑Singh, S., Glupczynski, Y., Carmeli, Y., Tacconelli, E., Malhotra‑Kumar, S. and the SATURN WP1,4, 5 study groups. (2024). Tracing carriage, acquisition, and transmission of ESBL-producing Escherichia coli over two years in a tertiary care hospital. Genome Medicine 16:151. https://doi.org/10.1186/s13073-024-01424-2

Nüesch-Inderbinen;, M., Barmettler, K., Stevens, M.J.A., Cernela, N., Stephan, R. (2024). Shiga toxin-producing Escherichia coli isolated from hunted wild boar (Sus scrofa) in Switzerland. Schweizer Archiv für Tierheilkunde 166, 131–140. https://doi.org/10.17236/sat00 419

Ottardi, M., Lechner, I., Wang, J., Schmitt, S., Schneeberger, M., Schmid, R.M., Stephan, R., Meylan, M. (2024). Seroprevalence of Mycobacterium avium ssp. paratuberculosis in Swiss dairy herds and risk factors for a positive herd status and within-herd prevalence. Frontiers in Veterinary Science 11:1409694. doi: 10.3389/fvets.2024.1409694.

Scherrer, S., Biggel, M., Schneeberger, M., Cernela, N., Rademacher, F., Schmitt, S., Stephan, R. (2024). Genetic diversity and antimicrobial susceptibility of Streptococcus suis from diseased Swiss pigs collected between 2019 – 2022. Veterinary Microbiology 293:110084. doi: 10.1016/j.vetmic.2024.110084.

Speich, C., Stephan, R., Dhima, N., Hollenstein, F., Horlbog, J.A., Delvento, G., Altpeter, E., Zuske, M., Raess, M., Greter, H. (2024). Rapid detection of the source of a Listeria monocytogenes outbreak in Switzerland through routine interviewing of patients and whole genome sequencing. Swiss Medical Weekly 154:3745. doi:https://doi.org/10.57187/s.3745.

Stephan, R., Horlbog, J.A., Nüesch-Inderbinen, M., Dhima, N. (2024). Outbreak of listeriosis most likely associated with baker’s yeast products, Switzerland, 2022-2024. Emerging Infectious Disease 30(11):2424-2426. doi: 10.3201/eid3011.240764.

Stephan, R., Ramsauer, A.S., Thür, B., Schlatter, A., Hilbe, M. (2024). Was ist Ihre Diagnose? Schweizer Archiv für Tierheilkunde, 166, 92–96. https://doi.org/10.17236/sat00418.

Stevens, M.J.A., Horlbog, J.A., Diethelm, A., Stephan, R., Nüesch-Inderbinen, M. (2024). Characteristics and comparative genome analysis of Yersinia enterocolitica and related species associated with human infections in Switzerland 2019-2023. Infection, Genetics and Evolution 123, 105652. https://doi.org/10.1016/j.meegid.2024.105652

Stevens, M.J.A, Nüesch-Inderbinen, M., Horlbog, J., Diethelm, A., Stephan, R. (2024). Sucrose-fermenting Salmonella Typhimurium N23-2364: a challenge for the diagnostic laboratory. Journal Diagnostic Microbiology and Infectious Disease 109, 116280. https://doi.org/10.1016/j.diagmicrobio.2024.116280.

Stevens, M.J.A., Stephan, R., Horlbog, J.A., Cernela, N., Nüesch-Inderbinen, M. (2024). Whole genome sequence-based characterisation of Campylobacter isolated from broiler carcasses over a three-year period in a big poultry slaughterhouse reveals high genetic diversity and a recurring genomic lineage of Campylobacter jejuni. Infection, Genetics and Evolution 119,105578. https://doi.org/10.1016/j.meegid.2024.105578.

Tarrah, A., Meng, L., Tasara, T., Gupta, T.B. (2024) Editorial: Impact of dairy farming on the safety of raw milk and milk products. Frontiers in Microbiology 15:1491295. doi: 10.3389/fmicb.2024.1491295

Tönz, A., Freimüller Leischtfeld, S., Stevens, M.J.A., Glinski-Häfeli, D., Ladner, V., Gantenbein-Demarchi, C., Miescher Schwenninger, S. (2024). Growth control of Listeria monocytogenes in raw sausage via bacteriocin-producing Leuconostoc carnosum DH25. Foods 13, 298. https://doi.org/10.3390/foods13020298

Tresch, S., Biggel, M., Schnyder, M., Nüesch-Inderbinen, M., Stephan, R. (2024). Extended-specturm ß-lactamase (ESBL) and carbapenemase producing Enterobacterales isolated from fresh herbs and salads at retail level in Switzerland. Journal of Food Protection 87, 100368. doi: 10.1016/j.jfp.2024.100368.

Uea-Anuwong, T., Biggel, M., Cernela, N., Wai Hung, W., Lugsomya, K., Hoi Kiu, L., Tapio Gröhn, Y., Boss, S., Stephan, R., Nüesch-Inderbinen, M., Magouras, I. (2024). Antimicrobial resistance and phylogenetic relatedness of extended-spectrum ß-lactamase (ESBL)-producing Escherichia coli in peridomestic rats (Rattus norvegicus and Rattus tanezumi) linked to city areas and animal farms in Hong Kong. Environmental Research 251, 118623. https://doi.org/10.1016/j.envres.2024.118623.

Uea-Anuwong, T, Stephan, R, Stevens, M.J.A., Boss, S., Lugsomya, K., Hoi Kiu, L., Kamali, M., Tapio Gröhn, Y., Nekouei, O., Magouras, I. (2024). Isolation of community-associated methicillin-resistant Staphylococcus aureus (MRSA) sequence type (ST) 30 from house rats ( Rattus tanezumi ) in Hong Kong., One Health 19, 100861 https://doi.org/10.1016/j.onehlt.2024.100861

Velez, F.J., Bosilevac, J.M., Salazar, G., Kaur Kapoor, H., Mishra, A., Madoroba, E., Stanford, K., Fach, P., Delannoy, S., Stephan, R., Singh, P. (2024). Hydrolysis probe assays for the detection of pathogenic enterohemorrhagic Escherichia coli: multi-country validation study. Food Research International 196, 115105. https://doi.org/10.1016/j.foodres.2024.115105.

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Genome announcements

Nüesch-Inderbinen, M., Biggel, M., Wehrli, M., Fischer, A.H., Stephan, R. (2024). Complete genome sequence of the linezolid-resistant clinical Enterococcus faecalis N23-3408 linked to a livestock lineage in Switzerland. Microbiology Resource Announcements 13(6):e0024924. doi: 10.1128/mra.00249-24.

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Thesis

Gruber, M.H. (2024). Mikrobiologische Trinkwasseruntersuchungen der Schweizer Armee 2008 bis 2023. (Dr. med. vet.)

Mandinyenya, T. (2024). Nisin resistance is increased through GtcA mutation induced loss of cell wall teichoic acid N-acetylglucosamine modifications in Listeria monocytogenes. (Dr. med. vet.)

Tresch, S. (2024). Extended-specturm ß-lactamase (ESBL) and carbapenemase producing Enterobacterales isolated from fresh herbs and salads at retail level in Switzerland. (Dr. med. vet.)

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Weiterführende Informationen

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